IL_6Q9A_096

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

6Q9A|1|1|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q9A_096 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.1097

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

15

Unit IDs

6Q9A|1|1|U|2522
6Q9A|1|1|G|2523
*
6Q9A|1|1|C|2540
6Q9A|1|1|A|2541
6Q9A|1|1|A|2542
6Q9A|1|1|G|2543

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain f

50S ribosomal protein L36