IL_6Q9A_162

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

6Q9A|1|2|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q9A_162 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.2376

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6Q9A|1|2|C|1158
6Q9A|1|2|U|1159
6Q9A|1|2|G|1160
6Q9A|1|2|C|1161
*
6Q9A|1|2|G|1175
6Q9A|1|2|A|1176
6Q9A|1|2|G|1177
6Q9A|1|2|G|1178
6Q9A|1|2|A|1179
6Q9A|1|2|A|1180
6Q9A|1|2|G|1181

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain n

30S ribosomal protein S9