IL_6Q9A_165

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q9A_165 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.2729

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6Q9A|1|2|C|1259
6Q9A|1|2|G|1260
6Q9A|1|2|A|1261
6Q9A|1|2|C|1262
6Q9A|1|2|C|1263
*
6Q9A|1|2|G|1272
6Q9A|1|2|C|1273
6Q9A|1|2|A|1274
6Q9A|1|2|A|1275
6Q9A|1|2|G|1276

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

30S ribosomal protein S14

Chain x

30S ribosomal protein S19