IL_6Q9A_167
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 6Q9A|1|2|C|1400, 6Q9A|1|2|A|1503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q9A_167 not in the Motif Atlas
- Homologous match to IL_6CZR_165
- Geometric discrepancy: 0.1552
- The information below is about IL_6CZR_165
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
6Q9A|1|2|C|1399
6Q9A|1|2|C|1400
6Q9A|1|2|G|1401
*
6Q9A|1|2|C|1501
6Q9A|1|2|A|1502
6Q9A|1|2|A|1503
6Q9A|1|2|G|1504
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain 7
- Transfer RNA; tRNA
Coloring options: