IL_6Q9A_181

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUUAGCAG*CUGCUUAGA

Length

17 nucleotides

Bulged bases

6Q9A|1|4|C|130, 6Q9A|1|4|U|131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q9A|1|4|U|110
6Q9A|1|4|U|111
6Q9A|1|4|U|112
6Q9A|1|4|A|113
6Q9A|1|4|G|114
6Q9A|1|4|C|115
6Q9A|1|4|A|116
6Q9A|1|4|G|117
*
6Q9A|1|4|C|127
6Q9A|1|4|U|128
6Q9A|1|4|G|129
6Q9A|1|4|C|130
6Q9A|1|4|U|131
6Q9A|1|4|U|132
6Q9A|1|4|A|133
6Q9A|1|4|G|134
6Q9A|1|4|A|135

Current chains

Chain 4

tmRNA

Nearby chains

Chain h

30S ribosomal protein S3