IL_6Q9A_208
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUGCGAAACCCAAGGUGCA*UGUAGUACCGAGGAUGUAGGAA
- Length
- 42 nucleotides
- Bulged bases
- 6Q9A|1|4|G|31, 6Q9A|1|4|A|33, 6Q9A|1|4|U|308, 6Q9A|1|4|G|310
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q9A|1|4|U|26
6Q9A|1|4|U|27
6Q9A|1|4|U|28
6Q9A|1|4|G|29
6Q9A|1|4|C|30
6Q9A|1|4|G|31
6Q9A|1|4|A|32
6Q9A|1|4|A|33
6Q9A|1|4|A|34
6Q9A|1|4|C|35
6Q9A|1|4|C|36
6Q9A|1|4|C|37
6Q9A|1|4|A|38
6Q9A|1|4|A|39
6Q9A|1|4|G|40
6Q9A|1|4|G|41
6Q9A|1|4|U|42
6Q9A|1|4|G|43
6Q9A|1|4|C|44
6Q9A|1|4|A|45
*
6Q9A|1|4|U|306
6Q9A|1|4|G|307
6Q9A|1|4|U|308
6Q9A|1|4|A|309
6Q9A|1|4|G|310
6Q9A|1|4|U|311
6Q9A|1|4|A|312
6Q9A|1|4|C|313
6Q9A|1|4|C|314
6Q9A|1|4|G|315
6Q9A|1|4|A|316
6Q9A|1|4|G|317
6Q9A|1|4|G|318
6Q9A|1|4|A|319
6Q9A|1|4|U|320
6Q9A|1|4|G|321
6Q9A|1|4|U|322
6Q9A|1|4|A|323
6Q9A|1|4|G|324
6Q9A|1|4|G|325
6Q9A|1|4|A|326
6Q9A|1|4|A|327
Current chains
- Chain 4
- tmRNA
Nearby chains
- Chain 5
- SsrA-binding protein
Coloring options: