IL_6QDV_005

3D structure

PDB id

6QDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human post-catalytic P complex spliceosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCG*CAG

Length

7 nucleotides

Bulged bases

6QDV|1|6|C|6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QDV_005 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.1555

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6QDV|1|6|C|4
6QDV|1|6|U|5
6QDV|1|6|C|6
6QDV|1|6|G|7
*
6QDV|1|6|C|14
6QDV|1|6|A|15
6QDV|1|6|G|16

Current chains

Chain 6

U6 snRNA

Nearby chains

Chain A

Pre-mRNA-processing-splicing factor 8

Chain L

Protein BUD31 homolog

Chain o

Pre-mRNA-processing factor 17