IL_6QDV_014
3D structure
- PDB id
- 6QDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human post-catalytic P complex spliceosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAU*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QDV_014 not in the Motif Atlas
- Geometric match to IL_6CZR_171
- Geometric discrepancy: 0.3636
- The information below is about IL_6CZR_171
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 183
Unit IDs
6QDV|1|6|G|38
6QDV|1|6|A|39
6QDV|1|6|U|40
*
6QDV|1|I|G|7
6QDV|1|I|C|8
6QDV|1|I|C|9
Current chains
- Chain 6
- U6 snRNA
- Chain I
- Intron lariat: MINX RNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain O
- Cell division cycle 5-like protein
- Chain o
- Pre-mRNA-processing factor 17
Coloring options: