3D structure

PDB id
6QIK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AAUC*GUU
Length
7 nucleotides
Bulged bases
6QIK|1|A|U|14
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QIK_002 not in the Motif Atlas
Geometric match to IL_5TBW_079
Geometric discrepancy: 0.1977
The information below is about IL_5TBW_079
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

6QIK|1|A|A|12
6QIK|1|A|A|13
6QIK|1|A|U|14
6QIK|1|A|C|15
*
6QIK|1|y|G|144
6QIK|1|y|U|145
6QIK|1|y|U|146

Current chains

Chain A
25S ribosomal RNA
Chain y
5.8S ribosomal RNA

Nearby chains

Chain H
60S ribosomal protein L8-A
Chain O
60S ribosomal protein L15-A
Chain W
60S ribosomal protein L25

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0972 s