IL_6QIK_010
3D structure
- PDB id
- 6QIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UU*AGUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QIK_010 not in the Motif Atlas
- Geometric match to IL_4KQY_004
- Geometric discrepancy: 0.3642
- The information below is about IL_4KQY_004
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- Minor groove platform
- Motif group
- IL_02555.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
6QIK|1|A|U|177
6QIK|1|A|U|178
*
6QIK|1|A|A|238
6QIK|1|A|G|239
6QIK|1|A|U|240
6QIK|1|A|G|241
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain K
- 60S ribosomal protein L13-A
- Chain Z
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L37-A
Coloring options: