3D structure

PDB id
6QIK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UU*AGUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QIK_010 not in the Motif Atlas
Geometric match to IL_4KQY_004
Geometric discrepancy: 0.3642
The information below is about IL_4KQY_004
Detailed Annotation
Minor groove platform
Broad Annotation
Minor groove platform
Motif group
IL_02555.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
9

Unit IDs

6QIK|1|A|U|177
6QIK|1|A|U|178
*
6QIK|1|A|A|238
6QIK|1|A|G|239
6QIK|1|A|U|240
6QIK|1|A|G|241

Current chains

Chain A
25S ribosomal RNA

Nearby chains

Chain K
60S ribosomal protein L13-A
Chain Z
60S ribosomal protein L35-A
Chain i
60S ribosomal protein L37-A

Coloring options:


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