3D structure

PDB id
6QIK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAUAAAUC*GGAAUAC
Length
16 nucleotides
Bulged bases
6QIK|1|A|A|519, 6QIK|1|A|U|520
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QIK_018 not in the Motif Atlas
Homologous match to IL_5TBW_019
Geometric discrepancy: 0.1057
The information below is about IL_5TBW_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74024.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

6QIK|1|A|G|517
6QIK|1|A|G|518
6QIK|1|A|A|519
6QIK|1|A|U|520
6QIK|1|A|A|521
6QIK|1|A|A|522
6QIK|1|A|A|523
6QIK|1|A|U|524
6QIK|1|A|C|525
*
6QIK|1|A|G|567
6QIK|1|A|G|568
6QIK|1|A|A|569
6QIK|1|A|A|570
6QIK|1|A|U|571
6QIK|1|A|A|572
6QIK|1|A|C|573

Current chains

Chain A
25S ribosomal RNA

Nearby chains

Chain D
60S ribosomal protein L4-A
Chain M
60S ribosomal protein L14-A
Chain S
60S ribosomal protein L20-A
Chain b
60S ribosomal protein L7-A

Coloring options:


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