3D structure

PDB id
6QIK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAGUG*CUC
Length
8 nucleotides
Bulged bases
6QIK|1|A|A|1263
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QIK_051 not in the Motif Atlas
Homologous match to IL_8C3A_059
Geometric discrepancy: 0.2891
The information below is about IL_8C3A_059
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_63959.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
18

Unit IDs

6QIK|1|A|G|1262
6QIK|1|A|A|1263
6QIK|1|A|G|1264
6QIK|1|A|U|1265
6QIK|1|A|G|1266
*
6QIK|1|A|C|1275
6QIK|1|A|U|1276
6QIK|1|A|C|1277

Current chains

Chain A
25S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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