IL_6QIK_129

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

6QIK|1|A|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QIK_129 not in the Motif Atlas

Homologous match to IL_5TBW_134

Geometric discrepancy: 0.4566

The information below is about IL_5TBW_134

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6QIK|1|A|G|3340
6QIK|1|A|U|3341
6QIK|1|A|A|3342
*
6QIK|1|A|U|3363
6QIK|1|A|C|3364

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain v

60S ribosomal protein L24-A