IL_6QIK_150

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAGGGUGUAGAAUAAGUG*CCACUACCUUU

Length

30 nucleotides

Bulged bases

6QIK|1|A|G|2454, 6QIK|1|A|U|2455, 6QIK|1|A|A|2461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QIK|1|A|A|2447
6QIK|1|A|G|2448
6QIK|1|A|A|2449
6QIK|1|A|G|2450
6QIK|1|A|G|2451
6QIK|1|A|G|2452
6QIK|1|A|U|2453
6QIK|1|A|G|2454
6QIK|1|A|U|2455
6QIK|1|A|A|2456
6QIK|1|A|G|2457
6QIK|1|A|A|2458
6QIK|1|A|A|2459
6QIK|1|A|U|2460
6QIK|1|A|A|2461
6QIK|1|A|A|2462
6QIK|1|A|G|2463
6QIK|1|A|U|2464
6QIK|1|A|G|2465
*
6QIK|1|A|C|2489
6QIK|1|A|C|2490
6QIK|1|A|A|2491
6QIK|1|A|C|2492
6QIK|1|A|U|2493
6QIK|1|A|A|2494
6QIK|1|A|C|2495
6QIK|1|A|C|2496
6QIK|1|A|U|2497
6QIK|1|A|U|2498
6QIK|1|A|U|2499

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain p

uL1