Loop IL_6QIK

3D structure

PDB id: 6QIK (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: AAGCGAAUGAUUAGAGGUUCCG*UGACCUAUUCUCAAACUUU
Length: 41 nucleotides
Bulged bases: 6QIK|1|A|A|1006, 6QIK|1|A|U|1008, 6QIK|1|A|C|1016, 6QIK|1|A|U|1044, 6QIK|1|A|C|1045
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6QIK|1|A|A|997
6QIK|1|A|A|998
6QIK|1|A|G|999
6QIK|1|A|C|1000
6QIK|1|A|G|1001
6QIK|1|A|A|1002
6QIK|1|A|A|1003
6QIK|1|A|U|1004
6QIK|1|A|G|1005
6QIK|1|A|A|1006
6QIK|1|A|U|1007
6QIK|1|A|U|1008
6QIK|1|A|A|1009
6QIK|1|A|G|1010
6QIK|1|A|A|1011
6QIK|1|A|G|1012
6QIK|1|A|G|1013
6QIK|1|A|U|1014
6QIK|1|A|U|1015
6QIK|1|A|C|1016
6QIK|1|A|C|1017
6QIK|1|A|G|1018
*
6QIK|1|A|U|1034
6QIK|1|A|G|1035
6QIK|1|A|A|1036
6QIK|1|A|C|1037
6QIK|1|A|C|1038
6QIK|1|A|U|1039
6QIK|1|A|A|1040
6QIK|1|A|U|1041
6QIK|1|A|U|1042
6QIK|1|A|C|1043
6QIK|1|A|U|1044
6QIK|1|A|C|1045
6QIK|1|A|A|1046
6QIK|1|A|A|1047
6QIK|1|A|A|1048
6QIK|1|A|C|1049
6QIK|1|A|U|1050
6QIK|1|A|U|1051
6QIK|1|A|U|1052

Current chains

Chain A: 25S ribosomal RNA

Nearby chains

Chain E: 60S ribosomal protein L11-A
Chain P: 60S ribosomal protein L5
Chain T: 60S ribosomal protein L21-A
Chain w: 60S ribosomal export protein NMD3
Chain x: 5S ribosomal RNA; 5S rRNA

IL_6QIK_154