IL_6QIS_003
3D structure
- PDB id
- 6QIS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of CAG repeats with synthetic CMBL3a compound (model II)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.99 Å
Loop
- Sequence
- CAGCAG*CAGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QIS_003 not in the Motif Atlas
- Geometric match to IL_6QIT_001
- Geometric discrepancy: 0.2939
- The information below is about IL_6QIT_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42778.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6QIS|1|E|C|2
6QIS|1|E|A|3||A
6QIS|1|E|G|4||A
6QIS|1|E|C|5||A
6QIS|1|E|A|6
6QIS|1|E|G|7
*
6QIS|1|F|C|2
6QIS|1|F|A|3
6QIS|1|F|G|4
6QIS|1|F|C|5
6QIS|1|F|A|6
6QIS|1|F|G|7||A
Current chains
- Chain E
- RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3')
- Chain F
- RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3')
Nearby chains
- Chain A
- RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3')
- Chain C
- RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3')
- Chain D
- RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3')
- Chain H
- RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3')
Coloring options: