IL_6QNQ_035

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6QNQ|1|13|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_035 not in the Motif Atlas

Homologous match to IL_4LFB_035

Geometric discrepancy: 0.1559

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6QNQ|1|13|G|922
6QNQ|1|13|A|923
*
6QNQ|1|13|U|1393
6QNQ|1|13|A|1394
6QNQ|1|13|C|1395

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 4E

30S ribosomal protein S5