IL_6QNQ_042

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_042 not in the Motif Atlas

Geometric match to IL_5TBW_112

Geometric discrepancy: 0.1805

The information below is about IL_5TBW_112

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6QNQ|1|13|G|1050
6QNQ|1|13|C|1051
6QNQ|1|13|U|1052
*
6QNQ|1|13|G|1206
6QNQ|1|13|2MG|1207
6QNQ|1|13|C|1208

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1K

Transfer RNA; tRNA

Chain 2E

30S ribosomal protein S3

Chain 5I

30S ribosomal protein S14 type Z