IL_6QNQ_051

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

G(4OC)C(5MC)G*CG(UR3)AAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_051 not in the Motif Atlas

Homologous match to IL_4LFB_057

Geometric discrepancy: 0.1155

The information below is about IL_4LFB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QNQ|1|13|G|1401
6QNQ|1|13|4OC|1402
6QNQ|1|13|C|1403
6QNQ|1|13|5MC|1404
6QNQ|1|13|G|1405
*
6QNQ|1|13|C|1496
6QNQ|1|13|G|1497
6QNQ|1|13|UR3|1498
6QNQ|1|13|A|1499
6QNQ|1|13|A|1500
6QNQ|1|13|C|1501

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 2K

Transfer RNA; tRNA

Chain 4K

mRNA