IL_6QNQ_052
3D structure
- PDB id
- 6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome initiation complex (IC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GU(5MC)AC*GAAGUC
- Length
- 11 nucleotides
- Bulged bases
- 6QNQ|1|13|A|1492, 6QNQ|1|13|A|1493
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QNQ_052 not in the Motif Atlas
- Homologous match to IL_4LFB_058
- Geometric discrepancy: 0.2376
- The information below is about IL_4LFB_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6QNQ|1|13|G|1405
6QNQ|1|13|U|1406
6QNQ|1|13|5MC|1407
6QNQ|1|13|A|1408
6QNQ|1|13|C|1409
*
6QNQ|1|13|G|1491
6QNQ|1|13|A|1492
6QNQ|1|13|A|1493
6QNQ|1|13|G|1494
6QNQ|1|13|U|1495
6QNQ|1|13|C|1496
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1K
- Transfer RNA; tRNA
- Chain 3I
- 30S ribosomal protein S12
- Chain 4K
- mRNA
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