IL_6QNQ_082

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

6QNQ|1|14|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_082 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.347

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6QNQ|1|14|C|844
6QNQ|1|14|G|845
6QNQ|1|14|C|846
*
6QNQ|1|14|G|931
6QNQ|1|14|G|932
6QNQ|1|14|A|933
6QNQ|1|14|G|934

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain H5

50S ribosomal protein L30