IL_6QNQ_102

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_102 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0596

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6QNQ|1|14|A|1262
6QNQ|1|14|U|1263
6QNQ|1|14|G|1264
6QNQ|1|14|A|1265
6QNQ|1|14|G|1266
6QNQ|1|14|U|1267
6QNQ|1|14|A|1268
6QNQ|1|14|A|1269
*
6QNQ|1|14|U|2011
6QNQ|1|14|G|2012
6QNQ|1|14|A|2013
6QNQ|1|14|A|2014
6QNQ|1|14|A|2015
6QNQ|1|14|U|2016
6QNQ|1|14|U|2017

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain A5

50S ribosomal protein L22

Chain J5

50S ribosomal protein L32