IL_6QNQ_108

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

6QNQ|1|14|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_108 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.163

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6QNQ|1|14|C|1417
6QNQ|1|14|G|1418
6QNQ|1|14|A|1419
6QNQ|1|14|U|1420
6QNQ|1|14|G|1421
*
6QNQ|1|14|C|1577
6QNQ|1|14|U|1578
6QNQ|1|14|A|1579
6QNQ|1|14|A|1580
6QNQ|1|14|G|1581

Current chains

Chain 14

23S ribosomal RNA

Nearby chains