IL_6QNQ_117

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_117 not in the Motif Atlas

Homologous match to IL_7RQB_064

Geometric discrepancy: 0.0957

The information below is about IL_7RQB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.2

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6QNQ|1|14|G|1651
6QNQ|1|14|A|1652
6QNQ|1|14|G|1653
6QNQ|1|14|A|1654
6QNQ|1|14|A|1655
6QNQ|1|14|C|1656
*
6QNQ|1|14|G|2004
6QNQ|1|14|A|2005
6QNQ|1|14|C|2006

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain 55

50S ribosomal protein L17