IL_6QNQ_130

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6QNQ|1|14|A|1938, 6QNQ|1|14|U|1944, 6QNQ|1|14|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_130 not in the Motif Atlas

Homologous match to IL_7RQB_077

Geometric discrepancy: 0.127

The information below is about IL_7RQB_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QNQ|1|14|C|1934
6QNQ|1|14|G|1935
6QNQ|1|14|A|1936
6QNQ|1|14|A|1937
6QNQ|1|14|A|1938
6QNQ|1|14|5MU|1939
6QNQ|1|14|U|1940
6QNQ|1|14|C|1941
6QNQ|1|14|5MC|1942
6QNQ|1|14|U|1943
6QNQ|1|14|U|1944
6QNQ|1|14|G|1945
*
6QNQ|1|14|C|1961
6QNQ|1|14|5MC|1962
6QNQ|1|14|U|1963
6QNQ|1|14|G|1964

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA