IL_6QNQ_240

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6QNQ|1|1H|G|801, 6QNQ|1|1H|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_240 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0828

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

6QNQ|1|1H|G|674
6QNQ|1|1H|A|675
6QNQ|1|1H|A|676
6QNQ|1|1H|A|677
6QNQ|1|1H|C|678
*
6QNQ|1|1H|G|799
6QNQ|1|1H|A|800
6QNQ|1|1H|G|801
6QNQ|1|1H|A|802
6QNQ|1|1H|U|803
6QNQ|1|1H|A|804
6QNQ|1|1H|G|805
6QNQ|1|1H|C|806

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain 78

50S ribosomal protein L15