IL_6QNQ_262
3D structure
- PDB id
- 6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome initiation complex (IC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GAGUG*CUC
- Length
- 8 nucleotides
- Bulged bases
- 6QNQ|1|1H|A|1088
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QNQ_262 not in the Motif Atlas
- Geometric match to IL_5D8H_003
- Geometric discrepancy: 0.3418
- The information below is about IL_5D8H_003
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_51387.3
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 21
Unit IDs
6QNQ|1|1H|G|1087
6QNQ|1|1H|A|1088
6QNQ|1|1H|G|1089
6QNQ|1|1H|U|1090
6QNQ|1|1H|G|1091
*
6QNQ|1|1H|C|1100
6QNQ|1|1H|U|1101
6QNQ|1|1H|C|1102
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 38
- 50S ribosomal protein L10
Coloring options: