IL_6QNQ_262

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6QNQ|1|1H|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_262 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.3418

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6QNQ|1|1H|G|1087
6QNQ|1|1H|A|1088
6QNQ|1|1H|G|1089
6QNQ|1|1H|U|1090
6QNQ|1|1H|G|1091
*
6QNQ|1|1H|C|1100
6QNQ|1|1H|U|1101
6QNQ|1|1H|C|1102

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 38

50S ribosomal protein L10