IL_6QNQ_278

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_278 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1222

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6QNQ|1|1H|A|1469
6QNQ|1|1H|G|1470
6QNQ|1|1H|A|1471
6QNQ|1|1H|A|1472
6QNQ|1|1H|G|1473
*
6QNQ|1|1H|U|1520
6QNQ|1|1H|G|1521
6QNQ|1|1H|G|1522
6QNQ|1|1H|U|1523

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains