IL_6QNQ_286

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6QNQ|1|1H|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_286 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1156

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6QNQ|1|1H|C|1686
6QNQ|1|1H|G|1687
6QNQ|1|1H|U|1688
6QNQ|1|1H|A|1689
6QNQ|1|1H|A|1690
6QNQ|1|1H|C|1691
*
6QNQ|1|1H|G|1696
6QNQ|1|1H|G|1697
6QNQ|1|1H|A|1698
6QNQ|1|1H|G|1699
6QNQ|1|1H|A|1700
6QNQ|1|1H|A|1701
6QNQ|1|1H|G|1702

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 13

Small subunit ribosomal RNA; SSU rRNA