IL_6QNQ_292

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_292 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.2519

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6QNQ|1|1H|U|1851
6QNQ|1|1H|C|1852
6QNQ|1|1H|A|1853
6QNQ|1|1H|A|1854
6QNQ|1|1H|G|1855
*
6QNQ|1|1H|C|1887
6QNQ|1|1H|G|1888
6QNQ|1|1H|A|1889
6QNQ|1|1H|A|1890
6QNQ|1|1H|G|1891

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 3K

Transfer RNA; tRNA