IL_6QNQ_295
3D structure
- PDB id
- 6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome initiation complex (IC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 6QNQ|1|1H|A|1938, 6QNQ|1|1H|U|1944
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QNQ_295 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1662
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
6QNQ|1|1H|C|1934
6QNQ|1|1H|G|1935
6QNQ|1|1H|A|1936
6QNQ|1|1H|A|1937
6QNQ|1|1H|A|1938
6QNQ|1|1H|5MU|1939
6QNQ|1|1H|U|1940
6QNQ|1|1H|C|1941
6QNQ|1|1H|5MC|1942
6QNQ|1|1H|U|1943
6QNQ|1|1H|U|1944
6QNQ|1|1H|G|1945
*
6QNQ|1|1H|C|1961
6QNQ|1|1H|5MC|1962
6QNQ|1|1H|U|1963
6QNQ|1|1H|G|1964
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: