IL_6QNQ_308

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

6QNQ|1|1H|C|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_308 not in the Motif Atlas

Homologous match to IL_5J7L_334

Geometric discrepancy: 0.5555

The information below is about IL_5J7L_334

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6QNQ|1|1H|U|2401
6QNQ|1|1H|C|2402
6QNQ|1|1H|C|2403
*
6QNQ|1|1H|G|2414
6QNQ|1|1H|G|2415

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 78

50S ribosomal protein L15

Chain J8

50S ribosomal protein L28

Chain O8

50S ribosomal protein L33

Chain Q8

50S ribosomal protein L35