3D structure

PDB id
6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome initiation complex (IC) with experimentally assigned potassium ions
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
GGGG*CCGAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QNQ_327 not in the Motif Atlas
Homologous match to IL_7RQB_109
Geometric discrepancy: 0.1313
The information below is about IL_7RQB_109
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_58764.3
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

6QNQ|1|1H|G|2843
6QNQ|1|1H|G|2844
6QNQ|1|1H|G|2845
6QNQ|1|1H|G|2846
*
6QNQ|1|1H|C|2870
6QNQ|1|1H|C|2871
6QNQ|1|1H|G|2872
6QNQ|1|1H|A|2873
6QNQ|1|1H|C|2874

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 21
50S ribosomal protein L3
Chain 98
50S ribosomal protein L17
Chain B8
50S ribosomal protein L19

Coloring options:


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