IL_6QNQ_334

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGU*ACCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_334 not in the Motif Atlas

Geometric match to IL_4V88_507

Geometric discrepancy: 0.231

The information below is about IL_4V88_507

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6QNQ|1|13|G|657
6QNQ|1|13|G|658
6QNQ|1|13|U|659
*
6QNQ|1|13|A|746
6QNQ|1|13|C|747
6QNQ|1|13|C|748
6QNQ|1|13|C|749

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 6I

30S ribosomal protein S15

Chain 7E

30S ribosomal protein S8