IL_6QNQ_359

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCCUGCGUAGGAUAGGUGGGAGCCUGUGAAC*GGGAGGCGCCGGUGAAAUACCACCCUGGC

Length

60 nucleotides

Bulged bases

6QNQ|1|14|U|2113, 6QNQ|1|14|A|2126, 6QNQ|1|14|U|2132, 6QNQ|1|14|U|2167, 6QNQ|1|14|A|2170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QNQ|1|14|G|2106
6QNQ|1|14|C|2107
6QNQ|1|14|C|2108
6QNQ|1|14|U|2109
6QNQ|1|14|G|2110
6QNQ|1|14|C|2111
6QNQ|1|14|G|2112
6QNQ|1|14|U|2113
6QNQ|1|14|A|2114
6QNQ|1|14|G|2115
6QNQ|1|14|G|2116
6QNQ|1|14|A|2117
6QNQ|1|14|U|2118
6QNQ|1|14|A|2119
6QNQ|1|14|G|2120
6QNQ|1|14|G|2121
6QNQ|1|14|U|2122
6QNQ|1|14|G|2123
6QNQ|1|14|G|2124
6QNQ|1|14|G|2125
6QNQ|1|14|A|2126
6QNQ|1|14|G|2127
6QNQ|1|14|C|2128
6QNQ|1|14|C|2129
6QNQ|1|14|U|2130
6QNQ|1|14|G|2131
6QNQ|1|14|U|2132
6QNQ|1|14|G|2133
6QNQ|1|14|A|2134
6QNQ|1|14|A|2135
6QNQ|1|14|C|2136
*
6QNQ|1|14|G|2155
6QNQ|1|14|G|2156
6QNQ|1|14|G|2157
6QNQ|1|14|A|2158
6QNQ|1|14|G|2159
6QNQ|1|14|G|2160
6QNQ|1|14|C|2161
6QNQ|1|14|G|2162
6QNQ|1|14|C|2163
6QNQ|1|14|C|2164
6QNQ|1|14|G|2165
6QNQ|1|14|G|2166
6QNQ|1|14|U|2167
6QNQ|1|14|G|2168
6QNQ|1|14|A|2169
6QNQ|1|14|A|2170
6QNQ|1|14|A|2171
6QNQ|1|14|U|2172
6QNQ|1|14|A|2173
6QNQ|1|14|C|2174
6QNQ|1|14|C|2175
6QNQ|1|14|A|2176
6QNQ|1|14|C|2177
6QNQ|1|14|C|2178
6QNQ|1|14|C|2179
6QNQ|1|14|U|2180
6QNQ|1|14|G|2181
6QNQ|1|14|G|2182
6QNQ|1|14|C|2183

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA