IL_6QNQ_364

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGU*ACAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_364 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.298

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6QNQ|1|1G|G|953
6QNQ|1|1G|G|954
6QNQ|1|1G|U|955
*
6QNQ|1|1G|A|1225
6QNQ|1|1G|C|1226
6QNQ|1|1G|A|1227
6QNQ|1|1G|C|1228

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 2L

Transfer RNA; tRNA

Chain 4A

30S ribosomal protein S13

Chain AA

30S ribosomal protein S19