IL_6QNQ_391

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNQ_391 not in the Motif Atlas

Homologous match to IL_9DFE_075

Geometric discrepancy: 0.1633

The information below is about IL_9DFE_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6QNQ|1|14|G|1856
6QNQ|1|14|G|1857
6QNQ|1|14|G|1858
6QNQ|1|14|A|1859
6QNQ|1|14|G|1860
*
6QNQ|1|14|C|1882
6QNQ|1|14|G|1883
6QNQ|1|14|A|1884
6QNQ|1|14|A|1885
6QNQ|1|14|C|1886

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 3L

Transfer RNA; tRNA

Chain F5

50S ribosomal protein L28