IL_6QNQ_398

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGCGUAGGAUAG*CCUG

Length

17 nucleotides

Bulged bases

6QNQ|1|1H|C|2111, 6QNQ|1|1H|G|2112, 6QNQ|1|1H|U|2113, 6QNQ|1|1H|G|2115, 6QNQ|1|1H|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QNQ|1|1H|C|2108
6QNQ|1|1H|U|2109
6QNQ|1|1H|G|2110
6QNQ|1|1H|C|2111
6QNQ|1|1H|G|2112
6QNQ|1|1H|U|2113
6QNQ|1|1H|A|2114
6QNQ|1|1H|G|2115
6QNQ|1|1H|G|2116
6QNQ|1|1H|A|2117
6QNQ|1|1H|U|2118
6QNQ|1|1H|A|2119
6QNQ|1|1H|G|2120
*
6QNQ|1|1H|C|2178
6QNQ|1|1H|C|2179
6QNQ|1|1H|U|2180
6QNQ|1|1H|G|2181

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA

Chain 71

50S ribosomal protein L1