IL_6QUL_009

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

6QUL|1|A|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QUL_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.251

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6QUL|1|A|C|274
6QUL|1|A|C|275
6QUL|1|A|U|276
6QUL|1|A|G|277
6QUL|1|A|A|278
6QUL|1|A|A|279
6QUL|1|A|U|280
6QUL|1|A|C|281
*
6QUL|1|A|G|359
6QUL|1|A|U|360
6QUL|1|A|G|361
6QUL|1|A|A|362
6QUL|1|A|G|363

Current chains

Chain A

23S rRNA

Nearby chains