IL_6QUL_029

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QUL_029 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.2412

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6QUL|1|A|G|875
6QUL|1|A|C|876
6QUL|1|A|A|877
6QUL|1|A|A|878
6QUL|1|A|G|879
*
6QUL|1|A|C|898
6QUL|1|A|A|899
6QUL|1|A|A|900
6QUL|1|A|C|901
6QUL|1|A|C|902

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16