3D structure

PDB id
6QUL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGG*UACC
Length
7 nucleotides
Bulged bases
6QUL|1|A|A|896
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QUL_030 not in the Motif Atlas
Geometric match to IL_1L9A_004
Geometric discrepancy: 0.3487
The information below is about IL_1L9A_004
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_85599.2
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
9

Unit IDs

6QUL|1|A|G|879
6QUL|1|A|G|880
6QUL|1|A|G|881
*
6QUL|1|A|U|895
6QUL|1|A|A|896
6QUL|1|A|C|897
6QUL|1|A|C|898

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.136 s
Application loaded.