IL_6QUL_064

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6QUL|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QUL_064 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0805

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6QUL|1|A|C|1686
6QUL|1|A|G|1687
6QUL|1|A|U|1688
6QUL|1|A|A|1689
6QUL|1|A|A|1690
6QUL|1|A|C|1691
*
6QUL|1|A|G|1696
6QUL|1|A|G|1697
6QUL|1|A|A|1698
6QUL|1|A|G|1699
6QUL|1|A|A|1700
6QUL|1|A|A|1701
6QUL|1|A|G|1702

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2