3D structure

PDB id
6QUL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QUL_090 not in the Motif Atlas
Homologous match to IL_5J7L_338
Geometric discrepancy: 0.1031
The information below is about IL_5J7L_338
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

6QUL|1|A|C|2466
6QUL|1|A|C|2467
6QUL|1|A|A|2468
6QUL|1|A|A|2469
6QUL|1|A|G|2470
*
6QUL|1|A|C|2480
6QUL|1|A|G|2481
6QUL|1|A|A|2482
6QUL|1|A|C|2483
6QUL|1|A|G|2484

Current chains

Chain A
23S rRNA

Nearby chains

Chain N
50S ribosomal protein L16
Chain f
50S ribosomal protein L36

Coloring options:


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