IL_6QX9_006

3D structure

PDB id

6QX9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QX9_006 not in the Motif Atlas

Geometric match to IL_4KNQ_003

Geometric discrepancy: 0.1181

The information below is about IL_4KNQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6QX9|1|2|C|8
6QX9|1|2|U|9
6QX9|1|2|C|10
*
6QX9|1|6|G|88
6QX9|1|6|U|89
6QX9|1|6|G|90

Current chains

Chain 2

U2 snRNA

Chain 6

U6 snRNA

Nearby chains