IL_6QX9_011
3D structure
- PDB id
- 6QX9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UCC*GAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QX9_011 not in the Motif Atlas
- Geometric match to IL_4YHW_001
- Geometric discrepancy: 0.2318
- The information below is about IL_4YHW_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
6QX9|1|4|U|73
6QX9|1|4|C|74
6QX9|1|4|C|75
*
6QX9|1|6|G|34
6QX9|1|6|A|35
6QX9|1|6|A|36
Current chains
- Chain 4
- U4 snRNA
- Chain 6
- U6 snRNA
Nearby chains
- Chain 41
- Small nuclear ribonucleoprotein Sm D1
- Chain 5A
- Pre-mRNA-processing-splicing factor 8
- Chain R
- RNA-binding protein 42
- Chain S
- U4/U6.U5 tri-snRNP-associated protein 1
- Chain X
- U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein
Coloring options: