IL_6QZP_010

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGCGCCGCUCGUGG*CGGCGCGCCG

Length

25 nucleotides

Bulged bases

6QZP|1|L5|C|183, 6QZP|1|L5|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|C|175
6QZP|1|L5|G|176
6QZP|1|L5|G|177
6QZP|1|L5|C|178
6QZP|1|L5|G|179
6QZP|1|L5|C|180
6QZP|1|L5|C|181
6QZP|1|L5|G|182
6QZP|1|L5|C|183
6QZP|1|L5|U|184
6QZP|1|L5|C|185
6QZP|1|L5|G|186
6QZP|1|L5|U|187
6QZP|1|L5|G|188
6QZP|1|L5|G|189
*
6QZP|1|L5|C|252
6QZP|1|L5|G|253
6QZP|1|L5|G|254
6QZP|1|L5|C|255
6QZP|1|L5|G|256
6QZP|1|L5|C|257
6QZP|1|L5|G|258
6QZP|1|L5|C|259
6QZP|1|L5|C|260
6QZP|1|L5|G|261

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37