IL_6QZP_022

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUCCG*CGGC

Length

10 nucleotides

Bulged bases

6QZP|1|L5|G|483

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_022 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2081

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6QZP|1|L5|G|482
6QZP|1|L5|G|483
6QZP|1|L5|U|484
6QZP|1|L5|C|485
6QZP|1|L5|C|486
6QZP|1|L5|G|487
*
6QZP|1|L5|C|669
6QZP|1|L5|G|670
6QZP|1|L5|G|671
6QZP|1|L5|C|672

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

60S ribosomal protein L4

Chain Lr

60S ribosomal protein L28