IL_6QZP_025

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUC*GAC

Length

7 nucleotides

Bulged bases

6QZP|1|L5|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_025 not in the Motif Atlas

Geometric match to IL_5TBW_008

Geometric discrepancy: 0.2499

The information below is about IL_5TBW_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6QZP|1|L5|G|508
6QZP|1|L5|A|509
6QZP|1|L5|U|510
6QZP|1|L5|C|511
*
6QZP|1|L5|G|648
6QZP|1|L5|A|649
6QZP|1|L5|C|650

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L27a