IL_6QZP_036

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

6QZP|1|L5|C|1214, 6QZP|1|L5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_036 not in the Motif Atlas

Geometric match to IL_4WF9_034

Geometric discrepancy: 0.3737

The information below is about IL_4WF9_034

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6QZP|1|L5|C|1082
6QZP|1|L5|U|1083
6QZP|1|L5|C|1084
*
6QZP|1|L5|G|1213
6QZP|1|L5|C|1214
6QZP|1|L5|C|1215
6QZP|1|L5|C|1216
6QZP|1|L5|G|1217

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29