IL_6QZP_038

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAC*GGUCG

Length

9 nucleotides

Bulged bases

6QZP|1|L5|C|1202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_038 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2489

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

6QZP|1|L5|C|1093
6QZP|1|L5|G|1094
6QZP|1|L5|A|1095
6QZP|1|L5|C|1096
*
6QZP|1|L5|G|1199
6QZP|1|L5|G|1200
6QZP|1|L5|U|1201
6QZP|1|L5|C|1202
6QZP|1|L5|G|1203

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21